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====== MuPIF ======
{{ :mupif:mupif_logo.png?250|}}
A reliable multiscale/multiphysics numerical modeling requires including all relevant physical phenomena along the process chain, typically involving multiple scales, and the combination of knowledge from multiple fields. A pragmatic approach lies in combining existing tools, to build a customized multiphysics simulation chains. In order to achieve such a modular approach a multiphysics integration framework, called MuPIF has been designed, which provides an underlying infrastructure enabling high-level data exchange and steering of individual applications. 
====== Description ======
===== Framework Design =====
One of the main objectives is to develop an integrated modelling platform targeted to multiscale and multi-physics engineering problems. The approach followed in MuPIF is based on an system of distributed, interacting objects designed to solve given problem. The individual objects represent entities in the problem domain, including individual simulation packages, but also the data, such as fields and properties. The abstract classes are introduced for all entities in the model space. They define a common interface that needs to be implemented by any derived class, representing particular implementation of specific component. Such interface concept allows using any derived class on a very abstract level, using common services defined by abstract class, without being concerned with the implementation details of an individual software component. This essentially allows to manipulate all simulation tools using the same interface. Moreover, as the simulation data are represented by objects as well, the platform is independent on particular data format(s), as the exchanged data (such as fields and properties) can be manipulated using the same abstract interface. Therefore, the focus on services is provided by objects (object interfaces) and not on underlying data itself.

The complex simulation pipeline developed in MuPIF consists of top-level script in Python language (called scenario) enriched by newly introduced classes. Even though the platform can be used locally on a single computer orchestrating installed applications, the real strength of the MMP platform is its distributed design, allowing to execute simulation scenarios involving remote applications. MuPIF provides a transparent distributed object system, which takes care of the network communication between the objects when they are distributed over different machines on the network. One can just call a method on a remote object as if it were a local object – the use of remote objects is (almost) transparent. This is achieved by using the concept of proxies representing remote objects, which forward the calls to the remote objects and pass the results back to the calling code. In this way, there is no difference between simulation script for local or distributed case, except for the initialization, where, instead of creating local object, one has to connect to the remote object. 



===== Implementation =====
Rather than writing programs, the Python language will be extended by modules, representing interfaces to existing codes, with specific functionality. The emphasis will be on building infrastructure to facilitate the implementation of multi-physic and multi-level simulations. The high-level language serves as a “glue” to tie the modules or components together, to create specialized application. Python language provides the flexibility, interactivity, and extensibility needed for such an approach, thanks to its concise and pseudocode-like syntax, modularity and object-oriented design, introspection and self documentation capability, and the availability of a Numerics extension allowing the efficient storage and manipulation of large amounts of numerical data. The application interface can be conveniently realized by wrapping application code. The process of wrapping code can be automated to a fair extent using SWIG~\cite{Swig}, Boost~\cite{Boost}, or similar tools, which can generate wrapper code for several languages. This approach also allows a single source version of the component code to be maintained. 



===== Documentation =====
  * Online [[http://mech.fsv.cvut.cz/mupif/refman|Reference manual]]
====== How to get MuPIF ======
The development is now hosted at SourceForge [[http://sourceforge.net/projects/mupif/]]


====== How to use MuPIF ======
The framework provides a high-level support for mutual data exchange between individual applications. 
Each application should provide its implementation of Mupif Application Interface (API). This interface is needed for efficient steering and data exchange. This channel allows a framework to call the individual codes at appropriate times, handle exceptional situations, and request/update application data. Such an approach is very flexible and allows communication with particular applications on an abstract level, permitting easy addition/replacement of components. 

Framework includes support for different discretization techniques and specific field transfer operators, aware of underlying physical phenomena. The field representation and field exchange methods support various data types (scalar, vector, and tensorial values), independent on actual discretization. 

===== Minimal working example =====
This minimal working MuPIF script illustrates how to invoke oofem FEM solver using Mupif API, request solution field, and how to visualize this field using MayaVi.

<code python>
#run this code as "mayavi test.py"

#include MuPIF modules
from oofem_interface import *
from mupif import field
from mupif import timestep
from mupif import util

# MayaVi stuff
from enthought.mayavi.scripts import mayavi2
from enthought.mayavi.sources.vtk_data_source import VTKDataSource
from enthought.mayavi.modules.outline import Outline
from enthought.mayavi.modules.surface import Surface
from enthought.mayavi.modules.vectors import Vectors


def main():
    global mayavi

    # create new timestep
    tstep = timestep.TimeStep(1.0, 1.0)
    try:
        #create new oofem interface, pass problem input as parameter
        oofem = OOFEM_API("patch100.in")
        #solve the problem
        oofem.solve(tstep)
        #request displacement field
        f = oofem.giveField(field.FieldID.FID_Displacement, tstep)
    except APIError as e:
        print "OOFEM_API error occurred:",e
        
    # initialize MaiaVi visualizer to display the resuts
    # first, create tvtk data source from solution field
    src = util.field2VTKDataSource(f)

    #setup MayaVi scene
    mayavi.add_source(src)
    mayavi.add_module(Outline())
    m = Surface()
    m.actor.property.representation='w'
    mayavi.add_module(m)
                   
if __name__ == '__main__':

        mayavi.new_scene()
        main()
        
</code>




====== Resources ======
===== Related tools =====
  * Python Programming Language, [[http://www.python.org/]].
  * Boost  - C++ wrapper generator, [[http://www.python.org/]].
  * Pyro project home page, [[http://pyro.sourceforge.net/]].
===== Related Publications =====
  * B. Patzák, D. Rypl, and J. Kruis. Mupif – a distributed multi-physics integration tool. Advances in Engineering Software, 60–61(0):89 -- 97, 2013 (http://www.sciencedirect.com/science/article/pii/S0965997812001329).
  * B. Patzák. Design of a multi-physics integration tool. In B. H. V. Topping, J. M. Adam, F. J. Pallares, R. Bru, and M. L. Romero, editors, Proceedings of the Seventh International Conference on Engineering Computational Technology, Stirlingshire, United Kingdom, 2010. Civil-Comp Press. paper 127.

===== Similar projects =====
  * S.Karmesin, S. Haney, B. Humphrey, J. Cummings, T. Williams, J. Crotinger, S. Smith and E. Gavrilov, POOMA - Parallel Object-Oriented Methods and Applications, [[http://acts.nersc.gov/pooma.]]
  *  D. Brown, K. Chand, W. Henshaw, B. Miller, J. Painter, R. Pember, B. Philip, D. Quinlan and T. Rutaganira, OVERTURE, [[http://acts.nersc.gov/overture]].
  * ALEGRA, [[http://www.cs.sandia.gov/ALEGRA/Code_versions.html]].
  * AVS- Advanced Visual Systems, [[http://www.avs.com]].
===== Authors & Credits =====
Mupif developpers:
  * Bořek Patzák (Lead Developper)
  * Vit Šmilauer
  * Guillaume Pacquaut
  * Former developpers: Daniel Rypl, Jaroslav Kruis

Acknowledgements:
  * The development of MuPIF has been funded by Grant Agency of the Czech Republic - Projects No. P105/10/1402.
  * The development is at present suppoted by the EU project [[http://mmp-project.eu/|Multiscale Modelling Platform: Smart design of nano-enabled products in green technologies]], project number 604279.